BP_LOCAL_TAXONOMYDB_QUUser1Contributed Perl DocumeBP_LOCAL_TAXONOMYDB_QUERY(1)NAME
local_taxonomydb_query - query a local TaxonomyDB for species or
taxonid
DESCRIPTION
This script provides an example implementation of access to a local
Taxonomy database implemented with Berkeley DB (DB_File module is
needed).
Usage:
local_taxonomydb_query.PLS: [-v] --nodes nodes.dmp --names names.dmp "Genus1 species1" "Genus2 species2"
Providing the nodes.dmp and names.dmp files from the NCBI Taxonomy dump
(see Bio::DB::Taxonomy::flatfile for more info) is only necessary on
the first time running. This will create the local indexes and may
take quite a long time. However once created, these indexes will allow
fast access for species to taxon id OR taxon id to species name
lookups.
perl v5.14.1 2011-07-22 BP_LOCAL_TAXONOMYDB_QUERY(1)