BP_MRTRANS(1) User Contributed Perl Documentation BP_MRTRANS(1) NAME bp_mrtrans - implement a transformer of alignments from protein to mrna coordinates SYNOPSIS Usage: bp_mrtrans -i inputfile -o outputfile [-if input format] [-of output format] [-s cDNA sequence database] [-sf cDNA sequence format] [-h] DESCRIPTION This script will convert a protein alignment back into a cDNA. Loosely based on Bill Pearson's mrtrans. The options are: -o filename - the output filename [default STDOUT] -of format - output sequence format (multiple sequence alignment) [default phylip] -i filename - the input filename [required] -if format - input sequence format (multiple sequence alignment) [ default clustalw] -s --seqdb filename - the cDNA sequence database file -sf --seqformat - the cDNA seq db format (flatfile sequence format) -h - this help menu AUTHOR Jason Stajich, jason-at-bioperl-dot-org perl v5.14.1 2011-07-22 BP_MRTRANS(1)[top]
Vote for polarhome |