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ecattominc(1)							 ecattominc(1)

NAME
       ecattominc - convert an ecat format file (version 6.x or 7.x) to a minc
       format file

SYNOPSIS
       ecattominc [<options>] <infile> <outfile.mnc>

       ecattominc [-help]

DESCRIPTION
       ecattominc will convert an ecat data file (version 6.x  or  7.x)	 to  a
       minc file format Unless the -small_header option is specified, ecattom‐
       inc will conserve the maximum informations from	the  ecat  header  and
       subheader fields which will be respectively stored as attributes of the
       ecat-main and ecat-subhdr minc variables.  By default the whole	3D  or
       4D volume is converted, however, ecattominc allows for the selection of
       slice and frame ranges to be copied.  The voxel values of the generated
       minc file are decay corrected, unless the nodecay_correct flag is spec‐
       ified.  Finally, blood data file can be inserted within the  minc  file
       with the -bloodfile option.

OPTIONS
       Note that options can be specified in abbreviated form (as long as they
       are unique) and can be given anywhere on the command line.

General options
       -byte: Write out data as bytes (default).

       -short: Write out data as short integers.

       -clobber: Overwrite existing file.

       -noclobber: Don't overwrite existing file (default).

       -verbose: List files as they are converted (default)

       -quiet: Do not list files as they are converted.

Command specific options
       -decay_correct: Do decay correction on images (default).

       -nodecay_correct: Don't do decay correction.

       -slices:Range of slices to copy (counting from 0).
	       Default value: -2147483648 -2147483648

       -frames: Range of frames to copy (counting from 0).
	       Default value: -2147483648 -2147483648

       -frame: Single frame to copy (counting from 0).
	       Default value: -2147483648

       -small_header: Copy only basic header information.

       -all_header: Copy all header information (default).

       -bloodfile: Insert blood data from this file.

Generic options for all commands
       -help: Print summary of command-line options and abort

KNOWN BUGS
       No bug listed so far :=)

SEE ALSO
       minctoecat(1), rawtominc(1), minctoraw(1), dicomtominc(1)

AUTHOR
       Peter Neelin and Anthonin Reilhac (anthonin.reilhac@cermep.fr)

COPYRIGHTS
       Copyrights 2005 by Peter Neelin

								 ecattominc(1)

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