gmx-mk_angndx man page on DragonFly

gmx-mk_angndx man page on DragonFly

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gmx-mk_angndx(1)		GROMACS Manual		      gmx-mk_angndx(1)

NAME
       gmx-mk_angndx - Generate index files for 'gmx angle'

SYNOPSIS
       gmx mk_angndx [-s [<.tpr/.tpb/...>]] [-n [<.ndx>]] [-nice <int>]
		    [-type <enum>] [-[no]hyd] [-hq <real>]

DESCRIPTION
       gmx  mk_angndx  makes  an index file for calculation of angle distribu‐
       tions etc. It uses a run input file (.tpx) for the definitions  of  the
       angles, dihedrals etc.

OPTIONS
       Options to specify input and output files:

       -s [<.tpr/.tpb/...>] (topol.tpr) (Input)
	   Run input file: tpr tpb tpa

       -n [<.ndx>] (angle.ndx) (Output)
	   Index file

       Other options:

       -nice <int> (0)
	   Set the nicelevel

       -type <enum> (angle)
	   Type of angle: angle, dihedral, improper, ryckaert-bellemans

       -[no]hyd	 (yes)
	   Include angles with atoms with mass	1.5

       -hq <real> (-1)
	   Ignore  angles  with	 atoms	with  mass  1.5 and magnitude of their
       charge less than this value

SEE ALSO
       gromacs(7)

       More  information  about	 GROMACS  is  available	 at   <http://www.gro‐
       macs.org/>.

VERSION 5.0.6						      gmx-mk_angndx(1)

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