gmx-rama man page on DragonFly

gmx-rama man page on DragonFly

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gmx-rama(1)			GROMACS Manual			   gmx-rama(1)

NAME
       gmx-rama - Compute Ramachandran plots

SYNOPSIS
       gmx rama [-f [<.xtc/.trr/...>]] [-s [<.tpr/.tpb/...>]] [-o [<.xvg>]]
		[-nice <int>] [-b <time>] [-e <time>] [-dt <time>] [-[no]w]
		[-xvg <enum>]

DESCRIPTION
       gmx  rama  selects the phi/psi dihedral combinations from your topology
       file and computes these as a function of time. Using simple Unix	 tools
       such as grep you can select out specific residues.

OPTIONS
       Options to specify input and output files:

       -f [<.xtc/.trr/...>] (traj.xtc) (Input)
	   Trajectory: xtc trr cpt trj gro g96 pdb tng

       -s [<.tpr/.tpb/...>] (topol.tpr) (Input)
	   Run input file: tpr tpb tpa

       -o [<.xvg>] (rama.xvg) (Output)
	   xvgr/xmgr file

       Other options:

       -nice <int> (19)
	   Set the nicelevel

       -b <time> (0)
	   First frame (ps) to read from trajectory

       -e <time> (0)
	   Last frame (ps) to read from trajectory

       -dt <time> (0)
	   Only use frame when t MOD dt = first time (ps)

       -[no]w  (no)
	   View output .xvg, .xpm, .eps and .pdb files

       -xvg <enum> (xmgrace)
	   xvg plot formatting: xmgrace, xmgr, none

SEE ALSO
       gromacs(7)

       More   information  about  GROMACS  is  available  at  <http://www.gro‐
       macs.org/>.

VERSION 5.0.6							   gmx-rama(1)

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